Toolboxes

A collection of bioinformatics web tools

VLPIM Web Services

VLPIM: A Comprehensive Tool for Immunogenicity Modulation of Virus-like Particles

An integrated computational workflow for modulating protein immunogenicity through epitope identification, MHC-II binding evaluation, and structural superposition.

Features:
  • Epitope identification using NetMHCIIpan
  • Immunogenicity analysis with Sim scores
  • Structural superposition with RMSD and TM-align
  • Interactive web interface
Open Tool README Toolset View Source

Circular Contact Map

Nanobody–antigen interface analysis

Generate circular ribbon contact maps from mmCIF or edges.csv to visualize residue–residue contacts.

Features:
  • Contact extraction from mmCIF (two chains)
  • Interactive chord diagram (HTML) or PNG export
  • Simple CSV input: source,target[,distance]
Open Tool View Source

AF3 Helper

AlphaFold3 input builder & results analyzer

Generate compliant AF3 JSON input files and summarize AF3 prediction outputs (pLDDT, PTM/iPTM, ranking score) directly in the browser—no backend required.

Highlights:
  • Interactive JSON generator with FASTA parsing, batch conversion, and validation
  • Client-side analysis of AF3 result folders (.cif/.pdb + summary_confidences.json)
  • Download-ready CSV summaries and Looker Studio analytics
Open Tool AF3 scripts

More tools will be added in the future

Repository: GitHub | Report Issues

Analytics dashboard

Live Google Analytics 4 metrics rendered via Looker Studio. Use the embedded controls to explore visitors, traffic sources, and geographic distribution across the Toolboxes suite.